STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies

Julia M. Kelliher; Chloe Mirzayi; Sarah R. Bordenstein; Aaron Oliver; Christina A. Kellogg; Eneida L. Hatcher; Maureen Berg; Petr Baldrian; Mashael Aljumaah; Cassandra Maria Luz Miller; Christopher Mungall; Vlastimil Novak; Alexis Palucki; Ethan Smith; Nazifa Tabassum; Gregory Bonito; J. Rodney Brister; Patrick S. G. Chain; Mingfei Chen; Samuel Degregori; Jose Pablo Dundore-Arias; Joanne B. Emerson; Vanessa Moreira C. Fernandes; Roberto Flores; Antonio Gonzalez; Zoe A. Hansen; Scott A. Jackson; Ahmed M. Moustafa; Trent R. Northen; Nonia Pariente; Jennifer Pett-Ridge; Sydne Record; Linta Reji; Anna-Louise Reysenbach; Virginia I. Rich; Lorna Richardson; Simon Roux; Lynn M. Schriml; Reed S. Shabman; Maria A. Sierra; Matthew B. Sullivan; Punithavathi Sundaramurthy; Katherine M. Thibault; Luke R. Thompson; Scott Tighe; Ethell Vereen; STREAMS Consortium; Aaron Robinson; Abdoul R. Sare; Abdulmalik A. Oladipupo; Adrien Vigneron; Sergio Sanchez-Carrillo

doi:10.1038/s41564-025-02186-2

STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies

Julia M. Kelliher
, Chloe Mirzayi
, Sarah R. Bordenstein
, Aaron Oliver
, Christina A. Kellogg
, Eneida L. Hatcher
, Maureen Berg
, Petr Baldrian
, Mashael Aljumaah
, Cassandra Maria Luz Miller
, Christopher Mungall
, Vlastimil Novak
, Alexis Palucki
, Ethan Smith
, Nazifa Tabassum
, Gregory Bonito
, J. Rodney Brister
, Patrick S. G. Chain
, Mingfei Chen
, Samuel Degregori

Jose Pablo Dundore-Arias, Joanne B. Emerson, Vanessa Moreira C. Fernandes, Roberto Flores, Antonio Gonzalez, Zoe A. Hansen, Scott A. Jackson, Ahmed M. Moustafa, Trent R. Northen, Nonia Pariente, Jennifer Pett-Ridge, Sydne Record, Linta Reji, Anna-Louise Reysenbach, Virginia I. Rich, Lorna Richardson, Simon Roux, Lynn M. Schriml, Reed S. Shabman, Maria A. Sierra, Matthew B. Sullivan, Punithavathi Sundaramurthy, Katherine M. Thibault, Luke R. Thompson, Scott Tighe, Ethell Vereen, STREAMS Consortium, Aaron Robinson, Abdoul R. Sare, Abdulmalik A. Oladipupo, Adrien Vigneron, Sergio Sanchez-Carrillo

Research output: Contribution to a Journal (Peer & Non Peer) › Article › peer-review

2 Citations (Scopus)

Original language	English
Journal	Nature Microbiology
DOIs	https://doi.org/10.1038/s41564-025-02186-2
Publication status	Published - 1 Dec 2025

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Kelliher, J. M., Mirzayi, C., Bordenstein, S. R., Oliver, A., Kellogg, C. A., Hatcher, E. L., Berg, M., Baldrian, P., Aljumaah, M., Miller, C. M. L., Mungall, C., Novak, V., Palucki, A., Smith, E., Tabassum, N., Bonito, G., Brister, J. R., Chain, P. S. G., Chen, M., ... Sanchez-Carrillo, S. (2025). STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies. Nature Microbiology. https://doi.org/10.1038/s41564-025-02186-2

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title = "STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies",

author = "Kelliher, \{Julia M.\} and Chloe Mirzayi and Bordenstein, \{Sarah R.\} and Aaron Oliver and Kellogg, \{Christina A.\} and Hatcher, \{Eneida L.\} and Maureen Berg and Petr Baldrian and Mashael Aljumaah and Miller, \{Cassandra Maria Luz\} and Christopher Mungall and Vlastimil Novak and Alexis Palucki and Ethan Smith and Nazifa Tabassum and Gregory Bonito and Brister, \{J. Rodney\} and Chain, \{Patrick S. G.\} and Mingfei Chen and Samuel Degregori and Dundore-Arias, \{Jose Pablo\} and Emerson, \{Joanne B.\} and Fernandes, \{Vanessa Moreira C.\} and Roberto Flores and Antonio Gonzalez and Hansen, \{Zoe A.\} and Jackson, \{Scott A.\} and Moustafa, \{Ahmed M.\} and Northen, \{Trent R.\} and Nonia Pariente and Jennifer Pett-Ridge and Sydne Record and Linta Reji and Anna-Louise Reysenbach and Rich, \{Virginia I.\} and Lorna Richardson and Simon Roux and Schriml, \{Lynn M.\} and Shabman, \{Reed S.\} and Sierra, \{Maria A.\} and Sullivan, \{Matthew B.\} and Punithavathi Sundaramurthy and Thibault, \{Katherine M.\} and Thompson, \{Luke R.\} and Scott Tighe and Ethell Vereen and STREAMS Consortium and Aaron Robinson and Sare, \{Abdoul R.\} and Oladipupo, \{Abdulmalik A.\} and Adrien Vigneron and Sergio Sanchez-Carrillo",

year = "2025",

month = dec,

day = "1",

doi = "10.1038/s41564-025-02186-2",

language = "English",

journal = "Nature Microbiology",

issn = "2058-5276",

publisher = "Nature Research",

}

Kelliher, JM, Mirzayi, C, Bordenstein, SR, Oliver, A, Kellogg, CA, Hatcher, EL, Berg, M, Baldrian, P, Aljumaah, M, Miller, CML, Mungall, C, Novak, V, Palucki, A, Smith, E, Tabassum, N, Bonito, G, Brister, JR, Chain, PSG, Chen, M, Degregori, S, Dundore-Arias, JP, Emerson, JB, Fernandes, VMC, Flores, R, Gonzalez, A, Hansen, ZA, Jackson, SA, Moustafa, AM, Northen, TR, Pariente, N, Pett-Ridge, J, Record, S, Reji, L, Reysenbach, A-L, Rich, VI, Richardson, L, Roux, S, Schriml, LM, Shabman, RS, Sierra, MA, Sullivan, MB, Sundaramurthy, P, Thibault, KM, Thompson, LR, Tighe, S, Vereen, E, Consortium, STREAMS, Robinson, A, Sare, AR, Oladipupo, AA, Vigneron, A & Sanchez-Carrillo, S 2025, 'STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies', Nature Microbiology. https://doi.org/10.1038/s41564-025-02186-2

TY - JOUR

T1 - STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies

AU - Kelliher, Julia M.

AU - Mirzayi, Chloe

AU - Bordenstein, Sarah R.

AU - Oliver, Aaron

AU - Kellogg, Christina A.

AU - Hatcher, Eneida L.

AU - Berg, Maureen

AU - Baldrian, Petr

AU - Aljumaah, Mashael

AU - Miller, Cassandra Maria Luz

AU - Mungall, Christopher

AU - Novak, Vlastimil

AU - Palucki, Alexis

AU - Smith, Ethan

AU - Tabassum, Nazifa

AU - Bonito, Gregory

AU - Brister, J. Rodney

AU - Chain, Patrick S. G.

AU - Chen, Mingfei

AU - Degregori, Samuel

AU - Dundore-Arias, Jose Pablo

AU - Emerson, Joanne B.

AU - Fernandes, Vanessa Moreira C.

AU - Flores, Roberto

AU - Gonzalez, Antonio

AU - Hansen, Zoe A.

AU - Jackson, Scott A.

AU - Moustafa, Ahmed M.

AU - Northen, Trent R.

AU - Pariente, Nonia

AU - Pett-Ridge, Jennifer

AU - Record, Sydne

AU - Reji, Linta

AU - Reysenbach, Anna-Louise

AU - Rich, Virginia I.

AU - Richardson, Lorna

AU - Roux, Simon

AU - Schriml, Lynn M.

AU - Shabman, Reed S.

AU - Sierra, Maria A.

AU - Sullivan, Matthew B.

AU - Sundaramurthy, Punithavathi

AU - Thibault, Katherine M.

AU - Thompson, Luke R.

AU - Tighe, Scott

AU - Vereen, Ethell

AU - Consortium, STREAMS

AU - Robinson, Aaron

AU - Sare, Abdoul R.

AU - Oladipupo, Abdulmalik A.

AU - Vigneron, Adrien

AU - Sanchez-Carrillo, Sergio

PY - 2025/12/1

Y1 - 2025/12/1

UR - http://dx.doi.org/10.1038/s41564-025-02186-2

U2 - 10.1038/s41564-025-02186-2

DO - 10.1038/s41564-025-02186-2

M3 - Article

SN - 2058-5276

JO - Nature Microbiology

JF - Nature Microbiology

ER -

STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies

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