ReconMap: An interactive visualization of human metabolism

Alberto Noronha; Anna Dröfn Daníelsdóttir; Piotr Gawron; Freyr Jóhannsson; Soffía Jónsdóttir; Sindri Jarlsson; Jón Pétur Gunnarsson; Sigurur Brynjólfsson; Reinhard Schneider; Ines Thiele; Ronan M.T. Fleming

doi:10.1093/bioinformatics/btw667

ReconMap: An interactive visualization of human metabolism

Alberto Noronha
, Anna Dröfn Daníelsdóttir
, Piotr Gawron
, Freyr Jóhannsson
, Soffía Jónsdóttir
, Sindri Jarlsson
, Jón Pétur Gunnarsson
, Sigurur Brynjólfsson
, Reinhard Schneider
, Ines Thiele
, Ronan M.T. Fleming

Research output: Contribution to a Journal (Peer & Non Peer) › Article › peer-review

53 Citations (Scopus)

Abstract

Motivation: A genome-scale reconstruction of human metabolism, Recon 2, is available but no interface exists to interactively visualize its content integrated with omics data and simulation results. Results: We manually drew a comprehensive map, ReconMap 2.0, that is consistent with the content of Recon 2. We present it within a web interface that allows content query, visualization of custom datasets and submission of feedback to manual curators.

Original language	English
Pages (from-to)	605-607
Number of pages	3
Journal	Bioinformatics
Volume	33
Issue number	4
DOIs	https://doi.org/10.1093/bioinformatics/btw667
Publication status	Published - 15 Feb 2017
Externally published	Yes

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title = "ReconMap: An interactive visualization of human metabolism",

abstract = "Motivation: A genome-scale reconstruction of human metabolism, Recon 2, is available but no interface exists to interactively visualize its content integrated with omics data and simulation results. Results: We manually drew a comprehensive map, ReconMap 2.0, that is consistent with the content of Recon 2. We present it within a web interface that allows content query, visualization of custom datasets and submission of feedback to manual curators.",

author = "Alberto Noronha and Dan{\'i}elsd{\'o}ttir, \{Anna Dr{\"o}fn\} and Piotr Gawron and Freyr J{\'o}hannsson and Soff{\'i}a J{\'o}nsd{\'o}ttir and Sindri Jarlsson and Gunnarsson, \{J{\'o}n P{\'e}tur\} and Sigurur Brynj{\'o}lfsson and Reinhard Schneider and Ines Thiele and Fleming, \{Ronan M.T.\}",

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doi = "10.1093/bioinformatics/btw667",

language = "English",

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T2 - An interactive visualization of human metabolism

AU - Noronha, Alberto

AU - Daníelsdóttir, Anna Dröfn

AU - Gawron, Piotr

AU - Jóhannsson, Freyr

AU - Jónsdóttir, Soffía

AU - Jarlsson, Sindri

AU - Gunnarsson, Jón Pétur

AU - Brynjólfsson, Sigurur

AU - Schneider, Reinhard

AU - Thiele, Ines

AU - Fleming, Ronan M.T.

PY - 2017/2/15

Y1 - 2017/2/15

N2 - Motivation: A genome-scale reconstruction of human metabolism, Recon 2, is available but no interface exists to interactively visualize its content integrated with omics data and simulation results. Results: We manually drew a comprehensive map, ReconMap 2.0, that is consistent with the content of Recon 2. We present it within a web interface that allows content query, visualization of custom datasets and submission of feedback to manual curators.

AB - Motivation: A genome-scale reconstruction of human metabolism, Recon 2, is available but no interface exists to interactively visualize its content integrated with omics data and simulation results. Results: We manually drew a comprehensive map, ReconMap 2.0, that is consistent with the content of Recon 2. We present it within a web interface that allows content query, visualization of custom datasets and submission of feedback to manual curators.

UR - https://www.scopus.com/pages/publications/85024403074

U2 - 10.1093/bioinformatics/btw667

DO - 10.1093/bioinformatics/btw667

M3 - Article

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AN - SCOPUS:85024403074

SN - 1367-4803

VL - 33

SP - 605

EP - 607

JO - Bioinformatics

JF - Bioinformatics

IS - 4

ER -

ReconMap: An interactive visualization of human metabolism

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