CCPlotR: an R package for the visualization of cell-cell interactions

Sarah Ennis; Pilib O. Broin; Eva Szegezdi

doi:10.1093/bioadv/vbad130

CCPlotR: an R package for the visualization of cell-cell interactions

Sarah Ennis
, Pilib O. Broin
, Eva Szegezdi

Mathematics

Research output: Contribution to a Journal (Peer & Non Peer) › Article › peer-review

7 Citations (Scopus)

Abstract

We present CCPlotR-an R package that generates visualizations of cell-cell interactions. CCPlotR is designed to work with the output of tools that predict cell-cell interactions from single-cell gene expression data and requires only a table of predicted interactions as input. The package can generate a comprehensive set of publication-ready figures such as heatmaps, dotplots, circos plots and network diagrams, providing a useful resource for researchers working on cell-cell interactions.

Original language	English
Article number	vbad130
Journal	Bioinformatics Advances
Volume	3
Issue number	1
DOIs	https://doi.org/10.1093/bioadv/vbad130
Publication status	Published - 2023

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10.1093/bioadv/vbad130

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title = "CCPlotR: an R package for the visualization of cell-cell interactions",

abstract = "We present CCPlotR-an R package that generates visualizations of cell-cell interactions. CCPlotR is designed to work with the output of tools that predict cell-cell interactions from single-cell gene expression data and requires only a table of predicted interactions as input. The package can generate a comprehensive set of publication-ready figures such as heatmaps, dotplots, circos plots and network diagrams, providing a useful resource for researchers working on cell-cell interactions.",

author = "Sarah Ennis and Broin, \{Pilib O.\} and Eva Szegezdi",

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year = "2023",

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PY - 2023

Y1 - 2023

N2 - We present CCPlotR-an R package that generates visualizations of cell-cell interactions. CCPlotR is designed to work with the output of tools that predict cell-cell interactions from single-cell gene expression data and requires only a table of predicted interactions as input. The package can generate a comprehensive set of publication-ready figures such as heatmaps, dotplots, circos plots and network diagrams, providing a useful resource for researchers working on cell-cell interactions.

AB - We present CCPlotR-an R package that generates visualizations of cell-cell interactions. CCPlotR is designed to work with the output of tools that predict cell-cell interactions from single-cell gene expression data and requires only a table of predicted interactions as input. The package can generate a comprehensive set of publication-ready figures such as heatmaps, dotplots, circos plots and network diagrams, providing a useful resource for researchers working on cell-cell interactions.

UR - https://www.scopus.com/pages/publications/85174268990

U2 - 10.1093/bioadv/vbad130

DO - 10.1093/bioadv/vbad130

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VL - 3

JO - Bioinformatics Advances

JF - Bioinformatics Advances

IS - 1

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ER -

CCPlotR: an R package for the visualization of cell-cell interactions

Abstract

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