BioconductorBuntu: A Linux distribution that implements a web-based DNA microarray analysis server

Paul Geeleher; Dermot Morris; John P. Hinde; Aaron Golden

doi:10.1093/bioinformatics/btp165

BioconductorBuntu: A Linux distribution that implements a web-based DNA microarray analysis server

Paul Geeleher
, Dermot Morris
, John P. Hinde
, Aaron Golden

Research output: Contribution to a Journal (Peer & Non Peer) › Article › peer-review

5 Citations (Scopus)

Abstract

Summary: BioconductorBuntu is a custom distribution of Ubuntu Linux that automatically installs a server-side microarray processing environment, providing a user-friendly web-based GUI to many of the tools developed by the Bioconductor Project, accessible locally or across a network. System installation is via booting off a CD image or by using a Debian package provided to upgrade an existing Ubuntu installation. In its current version, several microarray analysis pipelines are supported including oligonucleotide, dual-or single-dye experiments, including post-processing with Gene Set Enrichment Analysis. BioconductorBuntu is designed to be extensible, by server-side integration of further relevant Bioconductor modules as required, facilitated by its straightforward underlying Python-based infrastructure. BioconductorBuntu offers an ideal environment for the development of processing procedures to facilitate the analysis of next-generation sequencing datasets.

Original language	English
Pages (from-to)	1438-1439
Number of pages	2
Journal	Bioinformatics
Volume	25
Issue number	11
DOIs	https://doi.org/10.1093/bioinformatics/btp165
Publication status	Published - 1 Jun 2009

Authors (Note for portal: view the doc link for the full list of authors)

Authors
Geeleher, P,Morris, D,Hinde, JP,Golden, A
Geeleher, P;Morris, D;Hinde, JP;Golden, A

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10.1093/bioinformatics/btp165

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AU - Hinde, John P.

AU - Golden, Aaron

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BioconductorBuntu: A Linux distribution that implements a web-based DNA microarray analysis server

Abstract

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