Personal profile
Research Interests
My research is primarily focused on the use of functional genomics approaches to understand the molecular basis of human disease. This work involves the identification of genes, whose expression patterns are altered under disease conditions, determining their disease-association and analysing their functional significance. My main research interests in which I have active programmes are: 1. Nucleic acid-based diagnostics assay development for infectious disease pathogen detectionI have a long-standing, ongoing research programme focused on the design, development and clinical validation of nucleic acid-based diagnostics assays for infectious disease. This is a research area, in which I am co-inventor of 8 granted patents, and over 50 filed patent applications. Licenses have been granted to four IVD companies to exploit co-invented patented technologies.2. span style=color: black; line-height: normal;Cancer small RNA biomarker discovery and nucleic acid-based diagnostic assay development This ongoing research programmes aims to identify and detect small regulatory span style=color: rgb(0, 0, 0); line-height: normal;RNA span style=color: black; line-height: normal;molecules and somatic cell mutations associated with cancer for diagnosis, therapeutic monitoring and disease management. 3. Molecular and cellular basis of complications of pregnancy and labour This research involves investigation of the molecular and cellular basis of complications of pregnancy and parturition to understand the underlying mechanisms involved in the process of labour, in reproductive tissues, including in particular myometrium. 4. Cellular interactions between novel biomaterials and vascular cells. Investigation of the molecular and cellular interactions between novel biomaterials with vascular cells and tissues has as a major goal, understanding and modulating the bodys response to implant materials.
Education/Academic qualification
BA Mod, MA, D.PHIL
External positions
General Manager, Enterprise Ireland
1 Jul 1994 → 31 Dec 2001
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being
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SDG 5 Gender Equality
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SDG 6 Clean Water and Sanitation
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SDG 7 Affordable and Clean Energy
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SDG 9 Industry, Innovation, and Infrastructure
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SDG 12 Responsible Consumption and Production
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SDG 14 Life Below Water
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Collaborations and top research areas from the last five years
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A novel enrichment-free, low-volume filtration and rapid lysis (ELR) method in combination with real-time PCR for detection of Shiga toxin-producing Escherichia coli (STEC) in water
Alfahl, Z., O'Connor, L., Morris, D., Smith, T. J., O'Dwyer, J., Hynds, P. D., Cormican, M. & Burke, L. P., 1 Jul 2025, In: Access Microbiology. 7, 7, 001009.v3.Research output: Contribution to a Journal (Peer & Non Peer) › Article › peer-review
Open Access1 Citation (Scopus) -
A novel Enrichment-free, Low-volume filtration and Rapid lysis method (ELR) in combination with real-time PCR for detection of Shiga toxin-producing Escherichia coli (STEC) in water
Alfahl, Z., O’Connor, L., Morris, D., Smith, T. J., O'Dwyer, J., Hynds, P. D., Cormican, M. & Burke, L. P., 26 Feb 2025Research output: Other contribution (Published) › Other contribution › peer-review
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Rapid detection of the novel human pathogen Pantoea piersonii: advancements in methodology
O'Connor, L., Minogue, E., Carolan, S., Darcy, G., Chueiri, A., Faherty, M., Morton, J., Mc Donagh, F., Singh, N. K., Venkateswaran, K., Miliotis, G. & Smith, T. J., Oct 2025, In: Diagnostic Microbiology and Infectious Disease. 113, 2, p. 116905Research output: Contribution to a Journal (Peer & Non Peer) › Article › peer-review
1 Citation (Scopus) -
A rapid on-site loop-mediated isothermal amplification technology as an early warning system for the detection of Shiga toxin-producing Escherichia coli in water
Burke, L., Alfahl, Z., Smith, T. J. & Morris, D., 1 Aug 2024, In: Journal Of Microbiology. 170, 8, 001485.Research output: Contribution to a Journal (Peer & Non Peer) › Article › peer-review
Open Access3 Citations (Scopus) -
A rapid on-site loop-mediated isothermal amplification technology as an early warning system for the detection of Shiga toxin-producing Escherichia coli in water.
Alfahl, Z., Biggins, S., Higgins, O., Chueiri, A., Smith, T. J., Morris, D., O'Dwyer, J., Hynds, P. D., Burke, L. P. & O'Connor, L., Aug 2024, In: Microbiology. 170, 8Research output: Contribution to a Journal (Peer & Non Peer) › Article › peer-review
Open Access
Activities
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Nucleic acid probes for detection of yeast and fungal species
Smith, T. (Other)
22 Nov 2017 → …Activity: Other › Patents & Licensing Agreements
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Nucleic acid probes for detection of yeast and fungal species
Smith, T. (Other)
22 Nov 2017 → …Activity: Other › Patents & Licensing Agreements
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Nucleic acid probes for detection of yeast and fungal species
Smith, T. (Other)
22 Nov 2017 → …Activity: Other › Patents & Licensing Agreements
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SW15 gene as a diagnostic target for the identification of fungal and yeast species
Smith, T. (Other)
29 Aug 2017 → …Activity: Other › Patents & Licensing Agreements
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NUI Galway Governing Authority(Internal) (External organisation)
Smith, T. (Member)
1 Feb 2016 → …Activity: Membership › Membership of committee