Accepting PhD Students

PhD projects

In recent years, the word networks has appeared frequently in many different areas, and a new multidisciplinary field called Network Science has begun to develop. Indeed, networks are playing a more and more important role in the current scientific literature, in particular in Computational Biology and Computer Science. For example, since the advent of molecular biology, considerable amount of data have been produced (usually represented as graphs) in the quest to understand gene functions and to discover gene modules that underlie cell development, cell disorder, and so on. In other fields, graph analysis is also popular and important. This aspect is witnessed by the increasing number of papers studying networks such as Internet, World Wide Web, online social networks or applying network theory to kernels built from data, and so on. Therefore it can be foreseen that inferring information based on graphs will have an ever-growing impact on both Science and Engineering. My research interests lie in Network Science, and my focus is in graph-based statisticalmachine learning models and their applications in Bioinformatics. A bio-molecular network can be viewed as a collection of nodes, representing the bio-molecules, connected by links, representing relations between the bio-molecules. I am working on inferring valuable information from bio-molecular networks.

Calculated based on number of publications stored in Pure and citations from PlumX

Personal profile

Biography

I enjoyed my research on Pure Mathematics, mainly guided by my PhD advisor Prof. Yuqi Guo.   However, in 2004, driven by my interest to solve practical problems, I decided to move to Computer Science. I joined the PhD programme in Computer Science amp; Engineering of CUHK where I obtained my second PhD (and later conducted months of postdoc research) under the supervision of Prof. Irwin King and Prof. Michael R. Lyu. In my thesis, I established three machine learning modelling frameworks: (i) Heat Diffusion Models on Random Graphs, (ii) Predictive Random Graph Ranking, and (iii) Random Graph Dependency. These belong to Statistical Modelling and Inference for Networks.  For my postdoctoral training I decided to work in Bioinformatics -- an area with many interesting practical problems which are both challenging and significant. During a period of more than three years with Prof. Alberto Paccanaro at Royal Holloway University of London, I have been developing novel graph-based statistical approaches (random walks, heat diffusion, semi-supervised machine learning, establishment of significance tests, etc.) for some significant biological problems such as inferring protein-protein interactions, calculating semantic similarity measures, predicting protein functions, and comparing different graphs. All these work belong to Bioinformatics using Statistical Methodology.   Now comes an ideal convergence point of my previous experiences: I am continuing my academic efforts on designingapplying statistical methods to tackle some Biological problems -- to which, I feel that, I am fully exploiting my abilities in Mathematics, Machine Learning, and Computer Science, and -- for which, my curiosity about living beings is substantially satisfied. A short phrase describing my current research is Bioinformatics amp; Statistical Modelling, especially of network data such as PPI, co-expression, and functional similarity.

Research Interests

My focus is in Bioinformatics amp; Statistical Modelling, especially of network data such as protein-protein interactions, co-expression, and functional similarity. A bio-molecular network can be viewed as a collection of nodes, representing the bio-molecules, connected by links, representing relations between the bio-molecules. I am working on inferring valuable information from bio-molecular networks.

Expertise related to UN Sustainable Development Goals

In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):

  • SDG 3 - Good Health and Well-being

Education/Academic qualification

MSc, PhD

Accepting PhD Students

  • Accepting PhD Students

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Collaborations and top research areas from the last five years

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  • Yezhao Zhong

    Yang, H. (Primary Supervisor)

    2024 → …

    Activity: OtherCurrent Postgraduates (Research) Supervised