Personal profile
Biography
Dr Effirul Ramlan is a Lecturer (Above the Bar) at the School of Computer Science, University of Galway. Prior to this role, he served as Genuity Science Lecturer at the UCD School of Medicine, Lecturer in Data Analytics at Ulster University (2019–2021), and Senior Lecturer in the Department of Artificial Intelligence at the University of Malaya (2009–2019). He obtained his PhD in Computer Science from the University of Southampton in 2009, specialising in the computational and theoretical development of nucleic acid computers as information processors.
Dr Ramlan’s research focuses on designing synthetic nucleic acid interfaces, including DNA and RNA nano-machines, capable of molecular-level information processing within biological systems.
He has published over 30 peer-reviewed journal articles and book chapters spanning both life sciences and computer science disciplines. Over the past decade, he has secured funding as Principal Investigator from various national and international research funding bodies.
Research Interests
The science of informed matter has led to the creation of self-organising, adaptive, and complex biocomputers. As a scientist specialising in biological computing, my research is dedicated to developing DNA-RNA interfaces capable of executing complex molecular-level information processing within biological systems.
My pioneering work includes novel molecular fabrication and programming techniques aimed at creating self-organising biomolecular computers. I explore unconventional computational models distinct from traditional silicon-based systems, providing new opportunities for advanced scientific applications, such as amorphous computation for theranostics systems. Additionally, I have developed a suite of computational tools focused on bioinformatics, particularly structural and sequence annotation and analysis. These tools have enabled novel insights into biomolecular structures and functions, thereby contributing significantly to our broader understanding of biological systems.
My research interests extend into evolutionary optimisation and bio-inspired algorithms, integrating artificial intelligence methodologies—particularly machine learning, including foundational models and reinforcement learning—to support diverse research activities in the life sciences. By connecting computer science methodologies with life science applications, my work seeks to drive groundbreaking discoveries in key areas, such as drug discovery, medical image analysis, and disease diagnosis.
Teaching Interests
Module Coordinator for:
- CT417 - Software Engineering III
- CT413 - Final Year Project (CS)
- CT2101 - Object Oriented Programming I
- CT5168 - Enterprise Java Programming
- CT5178 - Computing Architecture & Operating Systems
- CT3112 - Professional Skills
Education/Academic qualification
PhD
External positions
Genuity Science (Ireland) Lecturer (Genomics Data Science), University College Dublin
1 Apr 2021 → 31 Oct 2022
Lecturer in Data Analytics, Ulster University
1 May 2019 → 30 Apr 2021
Director of Research, Malaysia Genome Institute (MGI-NIBM)
1 Mar 2017 → 30 Apr 2019
Senior Lecturer (Artificial Intelligence), Universiti Malaya
10 Nov 2009 → 31 Mar 2019
Keywords
- QA75 Electronic computers. Computer science
- Artificial Intelligence
- Reinforcement Learning
- Amorphous Computation
- Bioinformatics
- Computational Biology
- Q Science (General)
- Synthetic Biology
- Biological Computing
- DNA / RNA Computers
Accepting PhD Students
- Accepting PhD Students
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being
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SDG 9 Industry, Innovation, and Infrastructure
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Collaborations and top research areas from the last five years
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GrAfSS: a webserver for substructure similarity searching and comparisons in the structures of proteins and RNA
Ghani, N. S. A., Emrizal, R., Moffit, S. M., Hamdani, H. Y., Ramlan, E. I. & Firdaus-Raih, M., 5 Jul 2022, In: Nucleic Acids Research. 50, W1, p. W375-W383Research output: Contribution to a Journal (Peer & Non Peer) › Article › peer-review
Open Access5 Citations (Scopus) -
Drug ReposER: a web server for predicting similar amino acid arrangements to known drug binding interfaces for potential drug repositioning
Ab Ghani, N. S., Ramlan, E. I. & Firdaus-Raih, M., 1 Jul 2019, In: Nucleic Acids Research. 47, W1, p. W350-W356Research output: Contribution to a Journal (Peer & Non Peer) › Article › peer-review
Open Access24 Citations (Scopus) -
The Anglerfish algorithm: a derivation of randomized incremental construction technique for solving the traveling salesman problem
Pook, M. F. & Ramlan, E. I., 1 Mar 2019, In: Evolutionary Intelligence. 12, 1, p. 11-20 10 p.Research output: Contribution to a Journal (Peer & Non Peer) › Article › peer-review
6 Citations (Scopus) -
Engineering of supramolecular RNA structures
Ramlan, E. I. & Firdaus-Raih, M., 1 Jan 2018, Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics. Elsevier, Vol. 1-3. p. 535-545 11 p.Research output: Chapter in Book or Conference Publication/Proceeding › Chapter › peer-review
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An Empirical Analysis of State-of-Art Classification Models in an IT Incident Severity Prediction Framework
Ahmed, S., Singh, M., Doherty, B., Ramlan, E., Harkin, K., Bucholc, M. & Coyle, D., Mar 2023, In: Applied Sciences (Switzerland). 13, 6, 3843.Research output: Contribution to a Journal (Peer & Non Peer) › Article › peer-review
Open Access10 Citations (Scopus)
Activities
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Royal Society Of Chemistry (Journal)
Ramlan, E. (Reviewer)
2024Activity: Reviews and editorial work › Reviews and Editorial work
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Ryan Institute (Organisational unit)
Ramlan, E. (Member)
2024Activity: Membership › Membership of network
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Scientific Reports (Journal)
Ramlan, E. (Reviewer)
2023Activity: Reviews and editorial work › Reviews and Editorial work
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AdvancedHE UK (External organisation)
Ramlan, E. (Member)
15 Aug 2016 → …Activity: Membership › Membership of board
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